IL_8OHD_088

3D structure

PDB id

8OHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OHD_088 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2182

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8OHD|1|5|C|2589
8OHD|1|5|G|2590
8OHD|1|5|A|2591
8OHD|1|5|U|2592
8OHD|1|5|C|2593
*
8OHD|1|5|G|2752
8OHD|1|5|G|2753
8OHD|1|5|G|2754
8OHD|1|5|A|2755
8OHD|1|5|G|2756

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34