IL_8OI5_001

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_001 not in the Motif Atlas

Homologous match to IL_8C3A_001

Geometric discrepancy: 0.089

The information below is about IL_8C3A_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OI5|1|1|G|4
8OI5|1|1|A|5
8OI5|1|1|C|6
*
8OI5|1|4|G|152
8OI5|1|4|U|153
8OI5|1|4|C|154

Current chains

Chain 1

25S

Chain 4

5.8S

Nearby chains

Chain p

60S ribosomal protein L8

Chain v

60S ribosomal protein L15-A