IL_8OI5_086

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

8OI5|1|1|C|2175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_086 not in the Motif Atlas

Homologous match to IL_8C3A_089

Geometric discrepancy: 0.0414

The information below is about IL_8C3A_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8OI5|1|1|C|2174
8OI5|1|1|C|2175
8OI5|1|1|A|2176
8OI5|1|1|G|2177
*
8OI5|1|1|C|2223
8OI5|1|1|G|2224

Current chains

Chain 1

25S

Nearby chains

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain j

60S ribosomal protein L2-B