IL_8OI5_093

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_093 not in the Motif Atlas

Homologous match to IL_8P9A_319

Geometric discrepancy: 0.056

The information below is about IL_8P9A_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

8OI5|1|1|G|2369
8OI5|1|1|C|2370
8OI5|1|1|G|2371
8OI5|1|1|G|2372
*
8OI5|1|1|U|2958
8OI5|1|1|A|2959
8OI5|1|1|C|2960

Current chains

Chain 1

25S

Nearby chains

Chain k

60S ribosomal protein L3

Chain w

Ribosomal protein L13

Chain x

Ribosomal protein L22