IL_8OI5_098

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUGAAGC*GGGU

Length

11 nucleotides

Bulged bases

8OI5|1|1|G|2500, 8OI5|1|1|A|2502, 8OI5|1|1|G|2503, 8OI5|1|1|G|2557, 8OI5|1|1|G|2558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_098 not in the Motif Atlas

Homologous match to IL_8C3A_106

Geometric discrepancy: 0.0586

The information below is about IL_8C3A_106

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74114.1

Basepair signature

cWW-cWS-cWW-L-R

Number of instances in this motif group

2

Unit IDs

8OI5|1|1|A|2498
8OI5|1|1|U|2499
8OI5|1|1|G|2500
8OI5|1|1|A|2501
8OI5|1|1|A|2502
8OI5|1|1|G|2503
8OI5|1|1|C|2504
*
8OI5|1|1|G|2556
8OI5|1|1|G|2557
8OI5|1|1|G|2558
8OI5|1|1|U|2559

Current chains

Chain 1

25S

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 8

60S ribosomal protein L25

Chain j

60S ribosomal protein L2-B

Chain p

60S ribosomal protein L8