3D structure

PDB id
8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CU*AUG
Length
5 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8OI5_154 not in the Motif Atlas
Homologous match to IL_8C3A_012
Geometric discrepancy: 0.055
The information below is about IL_8C3A_012
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_05035.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
38

Unit IDs

8OI5|1|AS|C|177
8OI5|1|AS|U|178
*
8OI5|1|AS|A|236
8OI5|1|AS|U|237
8OI5|1|AS|G|238

Current chains

Chain AS
25S

Nearby chains

Chain AU
5.8S ribosomal RNA; 5.8S rRNA
Chain BG
60S ribosomal protein L13
Chain CC
Ribosomal protein L29
Chain CE
60S ribosomal protein L37-B

Coloring options:


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