IL_8OI5_184
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8OI5|1|AS|G|997
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_184 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.0687
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8OI5|1|AS|G|995
8OI5|1|AS|C|996
8OI5|1|AS|G|997
8OI5|1|AS|A|998
8OI5|1|AS|A|999
8OI5|1|AS|U|1000
*
8OI5|1|AS|A|1042
8OI5|1|AS|A|1043
8OI5|1|AS|A|1044
8OI5|1|AS|C|1045
Current chains
- Chain AS
- 25S
Nearby chains
- Chain AT
- 5S ribosomal RNA; 5S rRNA
- Chain AZ
- Uncharacterized protein CaJ7.0206
- Chain BE
- 60S ribosomal protein L10
- Chain BO
- 60S ribosomal protein L21-A
Coloring options: