IL_8OI5_192

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUAAA*UUAUA

Length

10 nucleotides

Bulged bases

8OI5|1|AS|U|1327

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_192 not in the Motif Atlas

Homologous match to IL_8C3A_051

Geometric discrepancy: 0.0432

The information below is about IL_8C3A_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8OI5|1|AS|U|1163
8OI5|1|AS|U|1164
8OI5|1|AS|A|1165
8OI5|1|AS|A|1166
8OI5|1|AS|A|1167
*
8OI5|1|AS|U|1324
8OI5|1|AS|U|1325
8OI5|1|AS|A|1326
8OI5|1|AS|U|1327
8OI5|1|AS|A|1328

Current chains

Chain AS

25S

Nearby chains

Chain AT

5S ribosomal RNA; 5S rRNA

Chain BB

60S ribosomal protein L7-A

Chain BL

60S ribosomal protein L18-A

Chain BZ

60S ribosomal protein L32

Chain CA

60S ribosomal protein L33-A