IL_8OI5_198

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUUG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_198 not in the Motif Atlas

Homologous match to IL_8C3A_060

Geometric discrepancy: 0.0621

The information below is about IL_8C3A_060

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8OI5|1|AS|A|1339
8OI5|1|AS|U|1340
8OI5|1|AS|U|1341
8OI5|1|AS|G|1342
*
8OI5|1|AS|C|1354
8OI5|1|AS|U|1355
8OI5|1|AS|U|1356
8OI5|1|AS|U|1357

Current chains

Chain AS

25S

Nearby chains

Chain AY

60S ribosomal protein L4-B

Chain BA

60S ribosomal protein L6

Chain BB

60S ribosomal protein L7-A

Chain BL

60S ribosomal protein L18-A

Chain BZ

60S ribosomal protein L32