IL_8OI5_228

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8OI5|1|AS|A|2220, 8OI5|1|AS|A|2221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_228 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.0424

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8OI5|1|AS|U|2178
8OI5|1|AS|G|2179
*
8OI5|1|AS|U|2219
8OI5|1|AS|A|2220
8OI5|1|AS|A|2221
8OI5|1|AS|A|2222

Current chains

Chain AS

25S

Nearby chains

Chain AW

60S ribosomal protein L2-B