IL_8OI5_234

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8OI5|1|AS|A|2259, 8OI5|1|AS|C|2265, 8OI5|1|AS|C|2284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_234 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0482

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8OI5|1|AS|C|2255
8OI5|1|AS|C|2256
8OI5|1|AS|A|2257
8OI5|1|AS|A|2258
8OI5|1|AS|A|2259
8OI5|1|AS|U|2260
8OI5|1|AS|G|2261
8OI5|1|AS|C|2262
8OI5|1|AS|C|2263
8OI5|1|AS|U|2264
8OI5|1|AS|C|2265
8OI5|1|AS|G|2266
*
8OI5|1|AS|C|2282
8OI5|1|AS|G|2283
8OI5|1|AS|C|2284
8OI5|1|AS|G|2285

Current chains

Chain AS

25S

Nearby chains

Chain CI

60S ribosomal protein L41

Chain CM

Small subunit ribosomal RNA; SSU rRNA