IL_8OI5_243
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_243 not in the Motif Atlas
- Homologous match to IL_8C3A_109
- Geometric discrepancy: 0.0859
- The information below is about IL_8C3A_109
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8OI5|1|AS|U|2690
8OI5|1|AS|U|2691
8OI5|1|AS|G|2692
8OI5|1|AS|A|2693
*
8OI5|1|AS|U|2707
8OI5|1|AS|A|2708
8OI5|1|AS|C|2709
8OI5|1|AS|A|2710
Current chains
- Chain AS
- 25S
Nearby chains
- Chain AZ
- Uncharacterized protein CaJ7.0206
- Chain BL
- 60S ribosomal protein L18-A
- Chain BO
- 60S ribosomal protein L21-A
- Chain BW
- 60S ribosomal protein L29
- Chain CJ
- 60S ribosomal protein L42-B
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