IL_8OI5_247

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8OI5|1|AS|U|2832

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_247 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.0943

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8OI5|1|AS|G|2800
8OI5|1|AS|U|2801
8OI5|1|AS|G|2802
*
8OI5|1|AS|U|2830
8OI5|1|AS|U|2831
8OI5|1|AS|U|2832
8OI5|1|AS|U|2833
8OI5|1|AS|U|2834

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BE

60S ribosomal protein L10