IL_8OI5_269

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_269 not in the Motif Atlas

Homologous match to IL_8C3A_135

Geometric discrepancy: 0.0635

The information below is about IL_8C3A_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8OI5|1|AS|U|3265
8OI5|1|AS|U|3266
8OI5|1|AS|U|3267
8OI5|1|AS|G|3268
*
8OI5|1|AS|C|3276
8OI5|1|AS|U|3277
8OI5|1|AS|U|3278
8OI5|1|AS|A|3279

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BK

Ribosomal protein L22

Chain BY

60S ribosomal protein L31-B