IL_8OI5_288
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UCAAA*UGACAA
- Length
- 11 nucleotides
- Bulged bases
- 8OI5|1|B|A|466
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_288 not in the Motif Atlas
- Homologous match to IL_8C3A_394
- Geometric discrepancy: 0.0567
- The information below is about IL_8C3A_394
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_30569.1
- Basepair signature
- cWW-cWW-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OI5|1|B|U|37
8OI5|1|B|C|38
8OI5|1|B|A|39
8OI5|1|B|A|40
8OI5|1|B|A|41
*
8OI5|1|B|U|464
8OI5|1|B|G|465
8OI5|1|B|A|466
8OI5|1|B|C|467
8OI5|1|B|A|468
8OI5|1|B|A|469
Current chains
- Chain B
- 18S
Nearby chains
- Chain G
- 40S ribosomal protein S4
- Chain L
- Ribosomal protein S4
- Chain a
- 40S ribosomal protein S24
Coloring options: