3D structure

PDB id
8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GAUUAAG*CGC
Length
10 nucleotides
Bulged bases
8OI5|1|B|U|45, 8OI5|1|B|A|47
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8OI5_289 not in the Motif Atlas
Geometric match to IL_4V88_387
Geometric discrepancy: 0.0641
The information below is about IL_4V88_387
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77761.1
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

8OI5|1|B|G|42
8OI5|1|B|A|43
8OI5|1|B|U|44
8OI5|1|B|U|45
8OI5|1|B|A|46
8OI5|1|B|A|47
8OI5|1|B|G|48
*
8OI5|1|B|C|429
8OI5|1|B|G|430
8OI5|1|B|C|431

Current chains

Chain B
18S

Nearby chains

Chain Z
Ribosomal protein S23 (S12)

Coloring options:


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