IL_8OI5_329

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_329 not in the Motif Atlas

Homologous match to IL_8C3A_437

Geometric discrepancy: 0.0395

The information below is about IL_8C3A_437

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8OI5|1|B|G|856
8OI5|1|B|G|857
8OI5|1|B|U|858
8OI5|1|B|C|859
*
8OI5|1|B|G|938
8OI5|1|B|G|939
8OI5|1|B|A|940
8OI5|1|B|C|941

Current chains

Chain B

18S

Nearby chains

Chain D

40S ribosomal protein S1

Chain P

40S ribosomal protein S13

Chain d

40S ribosomal protein S27