IL_8OI5_346

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_346 not in the Motif Atlas

Homologous match to IL_8C3A_454

Geometric discrepancy: 0.0653

The information below is about IL_8C3A_454

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

8OI5|1|B|A|1219
8OI5|1|B|C|1220
8OI5|1|B|A|1221
*
8OI5|1|B|U|1234
8OI5|1|B|U|1235
8OI5|1|B|U|1236

Current chains

Chain B

18S

Nearby chains

Chain f

40S ribosomal protein S29A

Chain h

Ubiquitin-40S ribosomal protein S31 fusion protein