IL_8OI5_350

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGGC*GUCUGUGA

Length

12 nucleotides

Bulged bases

8OI5|1|B|U|1418, 8OI5|1|B|G|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_350 not in the Motif Atlas

Homologous match to IL_8C3A_457

Geometric discrepancy: 0.0603

The information below is about IL_8C3A_457

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55620.1

Basepair signature

cWW-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

8OI5|1|B|U|1261
8OI5|1|B|G|1262
8OI5|1|B|G|1263
8OI5|1|B|C|1264
*
8OI5|1|B|G|1415
8OI5|1|B|U|1416
8OI5|1|B|C|1417
8OI5|1|B|U|1418
8OI5|1|B|G|1419
8OI5|1|B|U|1420
8OI5|1|B|G|1421
8OI5|1|B|A|1422

Current chains

Chain B

18S

Nearby chains

Chain F

Ribosomal protein S3

Chain M

40S ribosomal protein S10-A

Chain W

Ribosomal protein S10

Chain f

40S ribosomal protein S29A

Chain i

60S ribosomal protein CAALFM_C304810CA