IL_8OI5_372
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGAU*AGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_372 not in the Motif Atlas
- Homologous match to IL_8C3A_480
- Geometric discrepancy: 0.0508
- The information below is about IL_8C3A_480
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8OI5|1|B|C|1665
8OI5|1|B|G|1666
8OI5|1|B|G|1667
8OI5|1|B|A|1668
8OI5|1|B|U|1669
*
8OI5|1|B|A|1706
8OI5|1|B|G|1707
8OI5|1|B|A|1708
8OI5|1|B|A|1709
8OI5|1|B|G|1710
Current chains
- Chain B
- 18S
Nearby chains
- Chain 7
- 60S ribosomal protein L24-A
- Chain I
- 40S ribosomal protein S6
- Chain K
- 40S ribosomal protein S8
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