IL_8OI5_390

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8OI5|1|CM|U|278

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_390 not in the Motif Atlas

Homologous match to IL_8C3A_409

Geometric discrepancy: 0.1154

The information below is about IL_8C3A_409

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8OI5|1|CM|C|273
8OI5|1|CM|C|274
*
8OI5|1|CM|G|277
8OI5|1|CM|U|278
8OI5|1|CM|G|279

Current chains

Chain CM

18S

Nearby chains

Chain BR

60S ribosomal protein L24-A

Chain CT

40S ribosomal protein S6