IL_8OI5_400

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGC*GGUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_400 not in the Motif Atlas

Homologous match to IL_8C3A_419

Geometric discrepancy: 0.1061

The information below is about IL_8C3A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47767.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8OI5|1|CM|G|485
8OI5|1|CM|G|486
8OI5|1|CM|C|487
*
8OI5|1|CM|G|495
8OI5|1|CM|G|496
8OI5|1|CM|U|497
8OI5|1|CM|C|498

Current chains

Chain CM

18S

Nearby chains