IL_8OI5_405

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8OI5|1|CM|U|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_405 not in the Motif Atlas

Homologous match to IL_8C3A_424

Geometric discrepancy: 0.0829

The information below is about IL_8C3A_424

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8OI5|1|CM|G|555
8OI5|1|CM|U|556
8OI5|1|CM|C|557
*
8OI5|1|CM|G|584
8OI5|1|CM|C|585

Current chains

Chain CM

18S

Nearby chains

Chain CL

60S ribosomal protein CAALFM_C304810CA

Chain CQ

Ribosomal protein S3

Chain DK

Ribosomal protein S23 (S12)

Chain DR

40S ribosomal protein S30