IL_8OI5_412

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_412 not in the Motif Atlas

Homologous match to IL_8P9A_413

Geometric discrepancy: 0.0618

The information below is about IL_8P9A_413

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8OI5|1|CM|U|733
8OI5|1|CM|U|734
8OI5|1|CM|U|735
*
8OI5|1|CM|A|783
8OI5|1|CM|U|784
8OI5|1|CM|G|785

Current chains

Chain CM

18S

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CU

40S ribosomal protein S7

Chain CY

40S ribosomal protein S11A

Chain DJ

40S ribosomal protein S22-A

Chain DK

Ribosomal protein S23 (S12)