IL_8OI5_432
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AUAAGGAUUGA*UCUUGAUUU
- Length
- 20 nucleotides
- Bulged bases
- 8OI5|1|CM|G|1213, 8OI5|1|CM|U|1243
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_432 not in the Motif Atlas
- Homologous match to IL_8C3A_453
- Geometric discrepancy: 0.0661
- The information below is about IL_8C3A_453
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38882.1
- Basepair signature
- cWW-L-R-tSS-R-L-tSH-R-L-cWW-R-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OI5|1|CM|A|1209
8OI5|1|CM|U|1210
8OI5|1|CM|A|1211
8OI5|1|CM|A|1212
8OI5|1|CM|G|1213
8OI5|1|CM|G|1214
8OI5|1|CM|A|1215
8OI5|1|CM|U|1216
8OI5|1|CM|U|1217
8OI5|1|CM|G|1218
8OI5|1|CM|A|1219
*
8OI5|1|CM|U|1236
8OI5|1|CM|C|1237
8OI5|1|CM|U|1238
8OI5|1|CM|U|1239
8OI5|1|CM|G|1240
8OI5|1|CM|A|1241
8OI5|1|CM|U|1242
8OI5|1|CM|U|1243
8OI5|1|CM|U|1244
Current chains
- Chain CM
- 18S
Nearby chains
- Chain CX
- 40S ribosomal protein S10-A
- Chain CZ
- 40S ribosomal protein S12
- Chain DQ
- 40S ribosomal protein S29A
Coloring options: