IL_8OI5_441

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUACU*AGAG

Length

9 nucleotides

Bulged bases

8OI5|1|CM|U|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_441 not in the Motif Atlas

Homologous match to IL_8C3A_461

Geometric discrepancy: 0.0712

The information below is about IL_8C3A_461

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13404.1

Basepair signature

cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8OI5|1|CM|C|1324
8OI5|1|CM|U|1325
8OI5|1|CM|A|1326
8OI5|1|CM|C|1327
8OI5|1|CM|U|1328
*
8OI5|1|CM|A|1368
8OI5|1|CM|G|1369
8OI5|1|CM|A|1370
8OI5|1|CM|G|1371

Current chains

Chain CM

18S

Nearby chains

Chain DD

40S ribosomal protein S16

Chain DE

40S ribosomal protein S17-B

Chain DH

Ribosomal protein S10