IL_8OI5_448
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGAUA*UUCAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_448 not in the Motif Atlas
- Homologous match to IL_8C3A_507
- Geometric discrepancy: 0.0445
- The information below is about IL_8C3A_507
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85536.1
- Basepair signature
- cWW-tSH-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OI5|1|CM|G|1527
8OI5|1|CM|G|1528
8OI5|1|CM|G|1529
8OI5|1|CM|A|1530
8OI5|1|CM|U|1531
8OI5|1|CM|A|1532
*
8OI5|1|CM|U|1553
8OI5|1|CM|U|1554
8OI5|1|CM|C|1555
8OI5|1|CM|A|1556
8OI5|1|CM|A|1557
8OI5|1|CM|C|1558
Current chains
- Chain CM
- 18S
Nearby chains
- Chain DF
- 40S ribosomal protein S18-B
- Chain DG
- 40S ribosomal protein S19-A
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