IL_8OI5_452
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_452 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.2429
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11399.2
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8OI5|1|CM|C|1631
8OI5|1|CM|G|1632
8OI5|1|CM|C|1633
8OI5|1|CM|U|1634
*
8OI5|1|CM|A|1740
8OI5|1|CM|A|1741
8OI5|1|CM|A|1742
8OI5|1|CM|A|1743
8OI5|1|CM|G|1744
Current chains
- Chain CM
- 18S
Nearby chains
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain CI
- 60S ribosomal protein L41
- Chain CL
- 60S ribosomal protein CAALFM_C304810CA
- Chain DK
- Ribosomal protein S23 (S12)
- Chain DR
- 40S ribosomal protein S30
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