IL_8OI5_458

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUCC*GCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_458 not in the Motif Atlas

Homologous match to IL_8C3A_479

Geometric discrepancy: 0.0466

The information below is about IL_8C3A_479

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8OI5|1|CM|C|1662
8OI5|1|CM|U|1663
8OI5|1|CM|C|1664
8OI5|1|CM|C|1665
*
8OI5|1|CM|G|1710
8OI5|1|CM|C|1711
8OI5|1|CM|U|1712
8OI5|1|CM|G|1713

Current chains

Chain CM

18S

Nearby chains

Chain BR

60S ribosomal protein L24-A

Chain CT

40S ribosomal protein S6

Chain CV

40S ribosomal protein S8