IL_8OIN_003

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

8OIN|1|AA|A|45

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_003 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.2769

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8OIN|1|AA|U|44
8OIN|1|AA|A|45
8OIN|1|AA|C|46
*
8OIN|1|AA|G|178
8OIN|1|AA|A|179

Current chains

Chain AA

12S rRNA

Nearby chains