IL_8OIN_013

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_013 not in the Motif Atlas

Geometric match to IL_5F5F_001

Geometric discrepancy: 0.1712

The information below is about IL_5F5F_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8OIN|1|AA|G|226
8OIN|1|AA|A|227
8OIN|1|AA|G|228
*
8OIN|1|AA|C|269
8OIN|1|AA|C|270
8OIN|1|AA|C|271

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AO

28S ribosomal protein S18b, mitochondrial

Chain Ad

28S ribosomal protein S5, mitochondrial isoform X2