IL_8OIN_020

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACCC*GC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_020 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.2557

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8OIN|1|AA|G|414
8OIN|1|AA|A|415
8OIN|1|AA|C|416
8OIN|1|AA|C|417
8OIN|1|AA|C|418
*
8OIN|1|AA|G|444
8OIN|1|AA|C|445

Current chains

Chain AA

12S rRNA

Nearby chains

Chain Ai

Mitochondrial ribosomal protein S11

Chain B8

Large subunit ribosomal RNA; LSU rRNA

Chain BL

uL2m