IL_8OIN_021

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_021 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.2026

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8OIN|1|AA|A|419
8OIN|1|AA|A|420
8OIN|1|AA|A|421
8OIN|1|AA|C|422
8OIN|1|AA|U|423
*
8OIN|1|AA|A|439
8OIN|1|AA|C|440
8OIN|1|AA|U|441
8OIN|1|AA|A|442
8OIN|1|AA|U|443

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AQ

28S ribosomal protein S21, mitochondrial

Chain Ai

Mitochondrial ribosomal protein S11

Chain B8

Large subunit ribosomal RNA; LSU rRNA