IL_8OIN_022

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUACUACUCG*CCUAAAAC

Length

18 nucleotides

Bulged bases

8OIN|1|AA|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_022 not in the Motif Atlas

Geometric match to IL_6UFH_002

Geometric discrepancy: 0.3908

The information below is about IL_6UFH_002

Detailed Annotation

10x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_22278.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8OIN|1|AA|G|491
8OIN|1|AA|U|492
8OIN|1|AA|A|493
8OIN|1|AA|C|494
8OIN|1|AA|U|495
8OIN|1|AA|A|496
8OIN|1|AA|C|497
8OIN|1|AA|U|498
8OIN|1|AA|C|499
8OIN|1|AA|G|500
*
8OIN|1|AA|C|507
8OIN|1|AA|C|508
8OIN|1|AA|U|509
8OIN|1|AA|A|510
8OIN|1|AA|A|511
8OIN|1|AA|A|512
8OIN|1|AA|A|513
8OIN|1|AA|C|514

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A interacting protein 1

Chain AJ

Mitochondrial ribosomal protein S12

Chain AL

28S ribosomal protein S15, mitochondrial