IL_8OIN_029

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CG*UCAAG

Length

7 nucleotides

Bulged bases

8OIN|1|AA|C|685, 8OIN|1|AA|A|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_029 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.2741

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8OIN|1|AA|C|617
8OIN|1|AA|G|618
*
8OIN|1|AA|U|684
8OIN|1|AA|C|685
8OIN|1|AA|A|686
8OIN|1|AA|A|687
8OIN|1|AA|G|688

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AC

Mitochondrial ribosomal protein S24

Chain AH

Mitochondrial ribosomal protein S10

Chain AK

Mitochondrial ribosomal protein S14

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain Ad

28S ribosomal protein S5, mitochondrial isoform X2