IL_8OIN_035

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8OIN|1|AA|C|844, 8OIN|1|AA|A|929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_035 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.1318

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8OIN|1|AA|C|843
8OIN|1|AA|C|844
8OIN|1|AA|G|845
*
8OIN|1|AA|C|927
8OIN|1|AA|A|928
8OIN|1|AA|A|929
8OIN|1|AA|G|930

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A interacting protein 1

Chain AG

P-site Met-tRNA(fMet)

Chain AI

mRNA

Chain Aa

Peptide chain release factor 1, mitochondrial