IL_8OIN_040

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCAAG*CAAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_040 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.3672

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8OIN|1|AA|U|859
8OIN|1|AA|C|860
8OIN|1|AA|A|861
8OIN|1|AA|A|862
8OIN|1|AA|G|863
*
8OIN|1|AA|C|907
8OIN|1|AA|A|908
8OIN|1|AA|A|909
8OIN|1|AA|G|910
8OIN|1|AA|A|911

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A interacting protein 1

Chain B8

Large subunit ribosomal RNA; LSU rRNA