IL_8OIN_045
3D structure
- PDB id
- 8OIN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUUG*CUUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIN_045 not in the Motif Atlas
- Geometric match to IL_4EYA_003
- Geometric discrepancy: 0.1929
- The information below is about IL_4EYA_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8OIN|1|AG|G|45
8OIN|1|AG|U|46
8OIN|1|AG|U|47
8OIN|1|AG|G|48
*
8OIN|1|AG|C|57
8OIN|1|AG|U|58
8OIN|1|AG|U|59
8OIN|1|AG|C|60
Current chains
- Chain AG
- P-site Met-tRNA(fMet)
Nearby chains
- Chain B8
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- Mitochondrial ribosomal protein L27
- Chain BU
- uL16m
- Chain Bp
- Mitochondrial ribosomal protein L40
- Chain Bw
- 39S ribosomal protein L48, mitochondrial
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