IL_8OIN_058

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_058 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1689

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8OIN|1|B8|G|249
8OIN|1|B8|A|250
8OIN|1|B8|C|251
*
8OIN|1|B8|G|341
8OIN|1|B8|C|342
8OIN|1|B8|C|343

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BJ

Mitochondrial ribosomal protein L34

Chain BN

Mitochondrial ribosomal protein L4