IL_8OIN_084

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

8OIN|1|B8|C|1050, 8OIN|1|B8|U|1436, 8OIN|1|B8|A|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_084 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.1195

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

8OIN|1|B8|A|1049
8OIN|1|B8|C|1050
8OIN|1|B8|G|1051
*
8OIN|1|B8|C|1435
8OIN|1|B8|U|1436
8OIN|1|B8|A|1437
8OIN|1|B8|U|1438

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BA

uL22m

Chain BH

Mitochondrial ribosomal protein L32

Chain BM

ICT1