IL_8OIN_107

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUAAU*AUUAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_107 not in the Motif Atlas

Geometric match to IL_4QLM_002

Geometric discrepancy: 0.3839

The information below is about IL_4QLM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8OIN|1|B8|G|1507
8OIN|1|B8|A|1508
8OIN|1|B8|U|1509
8OIN|1|B8|A|1510
8OIN|1|B8|A|1511
8OIN|1|B8|U|1512
*
8OIN|1|B8|A|1534
8OIN|1|B8|U|1535
8OIN|1|B8|U|1536
8OIN|1|B8|A|1537
8OIN|1|B8|A|1538
8OIN|1|B8|C|1539

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BR

39S ribosomal protein L13, mitochondrial

Chain Bh

Mitochondrial ribosomal protein S18A

Chain Bl

Ribosomal protein