IL_8OIP_015
3D structure
- PDB id
- 8OIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGCCAG*CGGUCAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8OIP|1|AA|C|258, 8OIP|1|AA|U|260, 8OIP|1|AA|A|261
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIP_015 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1792
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8OIP|1|AA|G|241
8OIP|1|AA|U|242
8OIP|1|AA|G|243
8OIP|1|AA|C|244
8OIP|1|AA|C|245
8OIP|1|AA|A|246
8OIP|1|AA|G|247
*
8OIP|1|AA|C|254
8OIP|1|AA|G|255
8OIP|1|AA|G|256
8OIP|1|AA|U|257
8OIP|1|AA|C|258
8OIP|1|AA|A|259
8OIP|1|AA|U|260
8OIP|1|AA|A|261
8OIP|1|AA|C|262
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AI
- mRNA
- Chain AJ
- Mitochondrial ribosomal protein S12
- Chain AZ
- Mitochondrial ribosomal protein S33
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain Ad
- 28S ribosomal protein S5, mitochondrial isoform X2
Coloring options: