IL_8OIP_048

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCAUG*UGAC

Length

10 nucleotides

Bulged bases

8OIP|1|AA|G|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIP_048 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.2381

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8OIP|1|AA|G|190
8OIP|1|AA|C|191
8OIP|1|AA|C|192
8OIP|1|AA|A|193
8OIP|1|AA|U|194
8OIP|1|AA|G|195
*
8OIP|1|AA|U|206
8OIP|1|AA|G|207
8OIP|1|AA|A|208
8OIP|1|AA|C|209

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

Mitochondrial ribosomal protein S25

Chain AU

Mitochondrial ribosomal protein S26