IL_8OIQ_030

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAAAG*CCAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_030 not in the Motif Atlas

Geometric match to IL_5TBW_074

Geometric discrepancy: 0.3153

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8OIQ|1|B8|U|786
8OIQ|1|B8|U|787
8OIQ|1|B8|A|788
8OIQ|1|B8|A|789
8OIQ|1|B8|A|790
8OIQ|1|B8|A|791
8OIQ|1|B8|G|792
*
8OIQ|1|B8|C|998
8OIQ|1|B8|C|999
8OIQ|1|B8|A|1000
8OIQ|1|B8|A|1001

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BM

ICT1

Chain BV

bL17m