IL_8OIQ_064

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCAGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_064 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.189

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8OIQ|1|B8|C|1454
8OIQ|1|B8|C|1455
8OIQ|1|B8|C|1456
8OIQ|1|B8|A|1457
8OIQ|1|B8|G|1458
8OIQ|1|B8|U|1459
8OIQ|1|B8|A|1460
8OIQ|1|B8|C|1461
*
8OIQ|1|B8|G|1466
8OIQ|1|B8|G|1467
8OIQ|1|B8|A|1468
8OIQ|1|B8|C|1469
8OIQ|1|B8|A|1470
8OIQ|1|B8|A|1471
8OIQ|1|B8|G|1472

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BS

Mitochondrial ribosomal protein L14