IL_8OIR_001

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

8OIR|1|AA|U|3

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_001 not in the Motif Atlas

Geometric match to IL_1S03_005

Geometric discrepancy: 0.3678

The information below is about IL_1S03_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8OIR|1|AA|A|2
8OIR|1|AA|U|3
8OIR|1|AA|A|4
*
8OIR|1|AA|U|20
8OIR|1|AA|U|21

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AO

28S ribosomal protein S18b, mitochondrial

Chain Ad

28S ribosomal protein S5, mitochondrial