IL_8OIR_022

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACCC*GC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_022 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.3169

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8OIR|1|AA|G|415
8OIR|1|AA|A|416
8OIR|1|AA|C|417
8OIR|1|AA|C|418
8OIR|1|AA|C|419
*
8OIR|1|AA|G|445
8OIR|1|AA|C|446

Current chains

Chain AA

12S rRNA

Nearby chains

Chain Ai

28S ribosomal protein S11, mitochondrial

Chain B8

Large subunit ribosomal RNA; LSU rRNA

Chain BL

39S ribosomal protein L2, mitochondrial