IL_8OIR_044

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_044 not in the Motif Atlas

Geometric match to IL_5TBW_128

Geometric discrepancy: 0.1599

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8OIR|1|AA|A|860
8OIR|1|AA|C|861
8OIR|1|AA|U|862
8OIR|1|AA|U|863
*
8OIR|1|AA|A|893
8OIR|1|AA|U|894
8OIR|1|AA|U|895
8OIR|1|AA|U|896

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A-interacting protein

Chain Aj

28S ribosomal protein S34, mitochondrial

Chain BS

39S ribosomal protein L14, mitochondrial