IL_8OIR_056

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8OIR|1|B8|G|341, 8OIR|1|B8|G|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_056 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1343

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8OIR|1|B8|G|236
8OIR|1|B8|A|237
8OIR|1|B8|A|238
8OIR|1|B8|A|239
8OIR|1|B8|C|240
*
8OIR|1|B8|G|339
8OIR|1|B8|U|340
8OIR|1|B8|G|341
8OIR|1|B8|A|342
8OIR|1|B8|U|343
8OIR|1|B8|A|344
8OIR|1|B8|G|345
8OIR|1|B8|C|346

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BN

39S ribosomal protein L4, mitochondrial

Chain BT

39S ribosomal protein L15, mitochondrial

Chain Bz

39S ribosomal protein L51, mitochondrial