IL_8OIR_081

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUAAUCACUUG*CCUG

Length

16 nucleotides

Bulged bases

8OIR|1|B8|A|931, 8OIR|1|B8|U|937, 8OIR|1|B8|U|956

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_081 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.5962

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

8OIR|1|B8|C|927
8OIR|1|B8|A|928
8OIR|1|B8|U|929
8OIR|1|B8|A|930
8OIR|1|B8|A|931
8OIR|1|B8|U|932
8OIR|1|B8|C|933
8OIR|1|B8|A|934
8OIR|1|B8|C|935
8OIR|1|B8|U|936
8OIR|1|B8|U|937
8OIR|1|B8|G|938
*
8OIR|1|B8|C|954
8OIR|1|B8|C|955
8OIR|1|B8|U|956
8OIR|1|B8|G|957

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AD

Aurora kinase A-interacting protein

Chain Aa

Peptide chain release factor 1, mitochondrial